Jižní trasa začíná navzdory jménu osady Pohoří na Šumavě v krásně pozapomenutých Novohradských horách a první úsek nás provede po zpevněných cestách údolím bývalých sklářských hutí na úpatí Žofínského pralesa.

Jižní trasu začínáme na neobyčejném místě - uprostřed barokního kostela Panny Marie Dobré rady, do kterého při troše štěstí budou prosvěcovat ranní paprsky slunce, jelikož loď kostela na přelomu tisíciletí přišla o střechu. Po 400 m se na konci osady Pohoří na Šumavě dáme vlevo na mezinárodní cyklotrasu EuroVelo 13, která je v tomto úseku zároveň Stezkou Českem a po ní se budeme držet až do místa předávky u Lesovny Žofín. Při 5% klesání seběhneme podél bývalých Janových hutí nejprve k rakouské hranici a odtud podél horního toku Lužnice do údolí bývalých Stříbrných Hutí na 5,5 km. Zde se doleva odloučíme od Lužnice a začneme dvoukilometrové 5% stoupání k bývalým Skelním Hutím, za nimiž budeme opět klesat k Huťskému rybníku u bývalých Terčích Hutí. Zde na 9. km odbočíme vpravo a pod Žofinským pralesem, nejstarší přírodní rezervací v ČR, doběhneme na předávku u Lesovny Žofín.

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